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Crystal Structure of EHMT2 bound to EZM8266
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3K5K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2 M Potassium fluoride, 20 %(w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.25 45.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.614 α = 90 b = 78.255 β = 91.33 c = 73.285 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 PIXEL DECTRIS PILATUS3 6M 2017-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97853 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.8 0.847 14.3 3.4 40862
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 0.884
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 45.9 40862 2177 99.34 0.21152 0.20964 0.2158 0.24653 0.2541 RANDOM 32.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.368 r_dihedral_angle_2_deg 7.856 r_long_range_B_refined 7.67 r_long_range_B_other 7.67 r_dihedral_angle_1_deg 6.585 r_scangle_other 5.18 r_mcangle_it 3.833 r_mcangle_other 3.832 r_scbond_it 3.38 r_scbond_other 3.379
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.368 r_dihedral_angle_2_deg 7.856 r_long_range_B_refined 7.67 r_long_range_B_other 7.67 r_dihedral_angle_1_deg 6.585 r_scangle_other 5.18 r_mcangle_it 3.833 r_mcangle_other 3.832 r_scbond_it 3.38 r_scbond_other 3.379 r_mcbond_other 2.601 r_mcbond_it 2.6 r_angle_refined_deg 1.392 r_angle_other_deg 0.812 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4396 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling REFMAC phasing