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hCA-II-4-(2-Aminoethyl)benzenesulfonamide-complex. Two molecules of inhibitor bound to active site and secondary binding pocket
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 1.5 M NaCit, 0.1 M Tris, pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.11 41.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.547 α = 90 b = 41.376 β = 104.566 c = 72.679 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 70.343 98.6 0.399 0.467 0.234 0.666 7 4.4 43063
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 95.9 0.105 3.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 70.343 42990 2040 98.4 0.162 0.1605 0.1671 0.1894 0.1948 7.685
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.897 -1.077 1.437 -1.563
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.306 r_dihedral_angle_3_deg 13.396 r_dihedral_angle_2_deg 8.485 r_dihedral_angle_1_deg 6.995 r_rigid_bond_restr 4.334 r_lrange_it 2.407 r_lrange_other 2.256 r_angle_refined_deg 1.734 r_angle_other_deg 1.106 r_scangle_it 0.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.306 r_dihedral_angle_3_deg 13.396 r_dihedral_angle_2_deg 8.485 r_dihedral_angle_1_deg 6.995 r_rigid_bond_restr 4.334 r_lrange_it 2.407 r_lrange_other 2.256 r_angle_refined_deg 1.734 r_angle_other_deg 1.106 r_scangle_it 0.793 r_scangle_other 0.793 r_mcangle_it 0.723 r_mcangle_other 0.723 r_scbond_it 0.559 r_scbond_other 0.559 r_mcbond_it 0.481 r_mcbond_other 0.48 r_symmetry_xyhbond_nbd_refined 0.25 r_nbd_other 0.235 r_nbd_refined 0.199 r_symmetry_nbd_other 0.196 r_symmetry_nbd_refined 0.189 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.103 r_symmetry_nbtor_other 0.091 r_symmetry_xyhbond_nbd_other 0.084 r_metal_ion_refined 0.039 r_xyhbond_nbd_other 0.021 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing