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hCA-II-Bivalent compound bound complex EthylUreadibenzensulfonamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 2.1 M Malonate, Tris, pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.11 41.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.42 α = 90 b = 41.3 β = 104.6 c = 72.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL DECTRIS PILATUS 300K 2019-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 29.11 69.8 0.061 0.07 0.033 0.998 12.8 4 38694
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 55.35 0.275 0.181 0.921 3.7 3.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 29.11 35073 1683 89.445 0.126 0.1239 0.159 0.1854 19.189
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.518 2.951 -2.988 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.935 r_dihedral_angle_3_deg 12.432 r_dihedral_angle_2_deg 7.616 r_dihedral_angle_1_deg 6.689 r_rigid_bond_restr 5.502 r_lrange_other 3.257 r_lrange_it 3.256 r_scangle_it 2.217 r_scangle_other 2.216 r_scbond_it 1.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.935 r_dihedral_angle_3_deg 12.432 r_dihedral_angle_2_deg 7.616 r_dihedral_angle_1_deg 6.689 r_rigid_bond_restr 5.502 r_lrange_other 3.257 r_lrange_it 3.256 r_scangle_it 2.217 r_scangle_other 2.216 r_scbond_it 1.733 r_scbond_other 1.732 r_angle_refined_deg 1.673 r_mcangle_it 1.634 r_mcangle_other 1.634 r_mcbond_it 1.247 r_mcbond_other 1.24 r_angle_other_deg 0.601 r_symmetry_nbd_refined 0.267 r_symmetry_xyhbond_nbd_refined 0.232 r_nbd_other 0.226 r_symmetry_nbd_other 0.201 r_nbd_refined 0.198 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.101 r_symmetry_nbtor_other 0.087 r_metal_ion_refined 0.053 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2063 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing