8U3M | pdb_00008u3m

The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC aromatic	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600
2	2D 1H-13C HSQC aromatic	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600
3	2D 1H-13C HSQC sugar	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600
4	2D 1H-13C HSQC sugar	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600
5	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600
6	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600
7	2D 1H-1H NOESY	1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR	90% H2O/10% D2O	25 mM	6.4	1 atm	298	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing	FARFAR-MD-NMR	Amber

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	10
Conformers Submitted Total Number	10
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	structure calculation	Rosetta		Honglue Shi
3	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman