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IgG1 Fc Heterodimer combYSelect1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LBL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 0.1M BisTris pH 6.5 and 21% PEG MME 5000
Crystal Properties Matthews coefficient Solvent content 2.7 54.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.782 α = 90 b = 79.394 β = 90 c = 142.902 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.51 40.88 98.13 0.24 0.254 0.079 0.993 30.3 10.2 19700
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.51 2.6 0.961 1.02 0.336 0.852 2.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.51 40.88 17731 1970 98.13 0.20601 0.20192 0.2116 0.2425 0.2458 RANDOM 77.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.38 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.098 r_dihedral_angle_1_deg 7.549 r_long_range_B_refined 7.191 r_long_range_B_other 7.19 r_scangle_other 5.357 r_scbond_it 3.535 r_scbond_other 3.534 r_mcangle_it 3.479 r_mcangle_other 3.478 r_mcbond_it 2.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.098 r_dihedral_angle_1_deg 7.549 r_long_range_B_refined 7.191 r_long_range_B_other 7.19 r_scangle_other 5.357 r_scbond_it 3.535 r_scbond_other 3.534 r_mcangle_it 3.479 r_mcangle_other 3.478 r_mcbond_it 2.259 r_mcbond_other 2.259 r_angle_refined_deg 1.446 r_angle_other_deg 0.476 r_chiral_restr 0.074 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3322 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 198
Software Software Software Name Purpose PDB-REDO refinement PHENIX refinement PHENIX phasing HKL-2000 data scaling HKL-2000 data reduction