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PorX primitive orthorhombic crystal form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.16 M calcium acetate, 0.08 M sodium cacodylate pH 6.5, 14.4% polyethylene glycol 8000 and 20% glycerol, 0.5 M sodium bromide
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.696 α = 90 b = 97.849 β = 90 c = 133.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-02-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 0.9537 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.16 99.6 0.091 0.098 0.038 0.998 13.7 6.7 65014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 99.1 0.573 0.62 0.234 0.925 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 42.4 61660 3297 99.45 0.181 0.17863 0.1889 0.22563 0.2315 RANDOM 31.631
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.91 -0.85 2.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.455 r_dihedral_angle_4_deg 16.238 r_dihedral_angle_3_deg 15.452 r_long_range_B_refined 7.189 r_long_range_B_other 7.126 r_dihedral_angle_1_deg 6.886 r_scangle_other 4.927 r_mcangle_it 3.611 r_mcangle_other 3.61 r_scbond_it 3.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.455 r_dihedral_angle_4_deg 16.238 r_dihedral_angle_3_deg 15.452 r_long_range_B_refined 7.189 r_long_range_B_other 7.126 r_dihedral_angle_1_deg 6.886 r_scangle_other 4.927 r_mcangle_it 3.611 r_mcangle_other 3.61 r_scbond_it 3.182 r_scbond_other 3.182 r_mcbond_it 2.482 r_mcbond_other 2.478 r_angle_refined_deg 1.484 r_angle_other_deg 1.272 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8386 Nucleic Acid Atoms Solvent Atoms 686 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction CRANK2 phasing