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Crystal Structure of HaloTag7 bound to JF669-HaloTag ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6U32
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 0.2 M ammonium phosphate monobasic, 0.1 M TRIS pH 8.5, 50% v/v (+/-)-2-methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.33 47.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.741 α = 90 b = 62.741 β = 90 c = 163.548 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2020-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0006 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 58.647 99.6 0.988 23 26.3 26532
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 98.9 0.904
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 58.647 26365 1325 98.886 0.196 0.1935 0.1951 0.2461 0.2493 22.595
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.198 1.198 -2.396
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.637 r_dihedral_angle_4_deg 23.117 r_dihedral_angle_3_deg 14.772 r_dihedral_angle_1_deg 6.361 r_lrange_it 4.778 r_lrange_other 4.73 r_scangle_it 3.831 r_scangle_other 3.83 r_scbond_it 2.517 r_scbond_other 2.516
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.637 r_dihedral_angle_4_deg 23.117 r_dihedral_angle_3_deg 14.772 r_dihedral_angle_1_deg 6.361 r_lrange_it 4.778 r_lrange_other 4.73 r_scangle_it 3.831 r_scangle_other 3.83 r_scbond_it 2.517 r_scbond_other 2.516 r_mcangle_it 2.45 r_mcangle_other 2.449 r_mcbond_it 1.733 r_mcbond_other 1.733 r_angle_refined_deg 1.662 r_angle_other_deg 1.353 r_nbd_other 0.243 r_symmetry_xyhbond_nbd_refined 0.217 r_nbd_refined 0.203 r_symmetry_nbd_other 0.178 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.172 r_symmetry_nbd_refined 0.171 r_chiral_restr 0.088 r_symmetry_nbtor_other 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2351 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing