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Crystal structure of T151V CAO1 in complex with piceatannol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7T8P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 42% sodium polyacrylate 2100
0.05 M HEPES-NaOH pH 7
Crystal Properties Matthews coefficient Solvent content 2.8 56.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.888 α = 90 b = 100.888 β = 90 c = 448.169 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 50.13 99.9 0.152 0.998 12.77 10.1 177907
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.13 99.7 2.377 0.413
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.01 50.13 170141 7766 99.91 0.16857 0.16749 0.19136 0.1793 RANDOM 37.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.16 0.31 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 15.735 r_dihedral_angle_3_deg 13.03 r_dihedral_angle_1_deg 7.345 r_long_range_B_refined 7.149 r_long_range_B_other 7.135 r_scangle_other 5.135 r_dihedral_angle_2_deg 3.7 r_mcangle_other 3.346 r_mcangle_it 3.344 r_scbond_it 3.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 15.735 r_dihedral_angle_3_deg 13.03 r_dihedral_angle_1_deg 7.345 r_long_range_B_refined 7.149 r_long_range_B_other 7.135 r_scangle_other 5.135 r_dihedral_angle_2_deg 3.7 r_mcangle_other 3.346 r_mcangle_it 3.344 r_scbond_it 3.23 r_scbond_other 3.23 r_mcbond_it 2.301 r_mcbond_other 2.301 r_angle_refined_deg 1.069 r_angle_other_deg 0.372 r_chiral_restr 0.053 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15942 Nucleic Acid Atoms Solvent Atoms 2001 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing