8SFU

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	Protein incubated with 1mM UDP and 2.5 mM naringin 0.2 M Sodium Chloride 0.1 M BIS-TRIS pH 6.5 25% w/v Polyethylene glycol 3,350

Crystal Properties
Matthews coefficient	Solvent content
2.33	47

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 47.482	α = 90
b = 115.677	β = 90
c = 165.693	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2022-04-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 22-ID	1.0000	APS	22-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	40	97.4	0.093	0.035	0.992	27.7	6.7		83547		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.83	96.4		0.843	0.301	0.894	1.9	6.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.8	34.402	83401	4170	97.403	0.182	0.18	0.2138	33.838

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.042			1.448		-1.406

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.675
r_dihedral_angle_3_deg	14.161
r_dihedral_angle_2_deg	9.95
r_lrange_it	6.124
r_dihedral_angle_1_deg	6.09
r_lrange_other	6.061
r_scangle_it	4.007
r_scangle_other	4.007
r_mcangle_other	2.631
r_mcangle_it	2.63
r_scbond_it	2.587
r_scbond_other	2.586
r_mcbond_it	1.786
r_mcbond_other	1.786
r_angle_refined_deg	1.671
r_angle_other_deg	0.864
r_symmetry_nbd_refined	0.271
r_nbd_other	0.27
r_nbd_refined	0.215
r_symmetry_nbd_other	0.213
r_nbtor_refined	0.174
r_xyhbond_nbd_refined	0.151
r_ncsr_local_group_1	0.095
r_symmetry_xyhbond_nbd_refined	0.093
r_chiral_restr	0.084
r_symmetry_nbtor_other	0.073
r_bond_refined_d	0.017
r_gen_planes_other	0.012
r_gen_planes_refined	0.009
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6549
Nucleic Acid Atoms
Solvent Atoms	609
Heterogen Atoms	132

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing
SERGUI	data collection