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Structure of EGFR in complex with MTX-531
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Unpublished model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 285 1.05 M Sodium Succinate pH 7.0, 0.1 M HEPES-NaOH pH 6.7
Crystal Properties Matthews coefficient Solvent content 3.42 64.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.517 α = 90 b = 145.517 β = 90 c = 145.517 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2022-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.965459 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.984 34.299 96.6 0.0874 0.0886 0.0141 1 29.54 39.82 34279
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.984 2.08 74.1 3.3256 3.3684 0.5339 0.588 1.45 39.58 3420
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.984 34.299 34274 1439 96.538 0.187 0.1859 0.2156 0.2163 57.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.781 r_dihedral_angle_3_deg 11.722 r_lrange_it 7.078 r_lrange_other 7.063 r_dihedral_angle_1_deg 6.566 r_dihedral_angle_2_deg 3.941 r_mcangle_it 3.712 r_mcangle_other 3.711 r_scangle_it 3.458 r_scangle_other 3.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.781 r_dihedral_angle_3_deg 11.722 r_lrange_it 7.078 r_lrange_other 7.063 r_dihedral_angle_1_deg 6.566 r_dihedral_angle_2_deg 3.941 r_mcangle_it 3.712 r_mcangle_other 3.711 r_scangle_it 3.458 r_scangle_other 3.457 r_mcbond_it 2.177 r_mcbond_other 2.176 r_scbond_it 2.029 r_scbond_other 2.028 r_angle_refined_deg 1.315 r_angle_other_deg 0.474 r_symmetry_nbd_refined 0.215 r_nbd_refined 0.209 r_symmetry_xyhbond_nbd_refined 0.187 r_symmetry_nbd_other 0.18 r_nbtor_refined 0.168 r_nbd_other 0.149 r_xyhbond_nbd_refined 0.143 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.062 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_symmetry_xyhbond_nbd_other 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_ext_dist_refined_b
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 38
Software Software Software Name Purpose autoPROC data processing XDS data reduction Aimless data scaling STARANISO data scaling REFMAC refinement REFMAC phasing