☰ Navigation Tabs
Crystal structure of class III lanthipeptide synthetase ThurKC in complex with ThurA1 leader peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 282.15 15% glycerol, 16% PEG 6000, 80 mM sodium cacodylate pH 6.5, 160 mM calcium acetate
Crystal Properties Matthews coefficient Solvent content 2.53 51.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.028 α = 90 b = 52.899 β = 95.728 c = 233.417 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.00385 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 232.3 96.9 0.093 0.104 0.995 9.8 4.5 66801
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.51 0.519 0.727
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.502 232.252 66800 3260 96.909 0.249 0.2456 0.2453 0.3072 0.3077 62.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.611 -0.241 2.175 3.415
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.244 r_dihedral_angle_3_deg 21.672 r_dihedral_angle_4_deg 21.545 r_lrange_it 10.271 r_dihedral_angle_1_deg 7.924 r_mcangle_it 6.465 r_scangle_it 6.107 r_mcbond_it 4.011 r_scbond_it 3.925 r_angle_refined_deg 1.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.244 r_dihedral_angle_3_deg 21.672 r_dihedral_angle_4_deg 21.545 r_lrange_it 10.271 r_dihedral_angle_1_deg 7.924 r_mcangle_it 6.465 r_scangle_it 6.107 r_mcbond_it 4.011 r_scbond_it 3.925 r_angle_refined_deg 1.242 r_nbtor_refined 0.316 r_ncsr_local_group_1 0.296 r_nbd_refined 0.254 r_symmetry_nbd_refined 0.248 r_xyhbond_nbd_refined 0.196 r_symmetry_xyhbond_nbd_refined 0.184 r_ncsr_local_group_2 0.145 r_chiral_restr 0.114 r_gen_planes_refined 0.005 r_bond_refined_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13859 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling CRANK2 phasing