8S8O | pdb_00008s8o

Solution Structure of cAMP-dependent Protein Kinase RII-alpha Subunit Dimerization and Docking Domain Complex with Microtubule Associated Protein 2c (84-111)

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
2	3D 1H-13C NOESY aliphatic	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
3	3D 1H-15N NOESY	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
4	3D 1H-13C NOESY aliphatic	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
5	3D 1H-15N NOESY filtered	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
6	3D 1H-13C NOESY aliphatic filtered	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
7	3D 1H-15N NOESY filtered	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
8	3D 1H-13C NOESY aliphatic filtered	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
9	2D 1H-15N HSQC	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
12	2D 1H-15N HSQC	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
11	2D 1H-15N HSQC	0.1 mM [U-15N] Microtubule associated protein 2c, 0.4 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 8 % v/v D2O, 40 mg/mL Pf1 phage	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
10	2D 1H-15N HSQC	0.23 mM [U-15N] Microtubule associated protein 2c, 0.92 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 7.5 % v/v D2O	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
14	2D 1H-15N HSQC IPAP	0.1 mM [U-15N] Microtubule associated protein 2c, 0.4 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 8 % v/v D2O, 40 mg/mL Pf1 phage	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
13	2D 1H-15N HSQC IPAP	0.23 mM [U-15N] Microtubule associated protein 2c, 0.92 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 7.5 % v/v D2O	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
15	3D HNCA	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
16	3D HN(CO)CA	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
17	3D HNCACB	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
18	3D CBCA(CO)NH	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
19	3D HCCH-TOCSY	0.5 mM [U-13C; U-15N] Microtubule associated protein 2c, 2 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 17 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 600
20	3D 1H-15N NOESY	0.45 mM I,V-13C; I,L,V-15N Microtubule associated protein 2c, 1.8 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 7.5 % v/v D2O	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 850
21	3D 1H-13C NOESY aliphatic	0.45 mM I,V-13C; I,L,V-15N Microtubule associated protein 2c, 1.8 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 7.5 % v/v D2O	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 850
22	3D HCCH-TOCSY	0.45 mM I,V-13C; I,L,V-15N Microtubule associated protein 2c, 1.8 mM cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 7.5 % v/v D2O	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 600
23	3D HNCA	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
24	3D HN(CO)CA	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
25	3D HNCACB	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
26	3D CBCA(CO)NH	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 950
27	3D HCCH-TOCSY	0.56 mM Microtubule associated protein 2c, 1.12 mM [U-13C; U-15N] cAMP-dependent protein kinase type II-alpha regulatory subunit, 50 mM MOPS, 100 mM sodium chloride, 10 % v/v D2O, 10 mM sodium azide	90% H2O/10% D2O	100 mM	6.9	1 bar	300.2	Bruker AVANCE III HD 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	950
2	Bruker	AVANCE III HD	850
3	Bruker	AVANCE III HD	600

NMR Refinement
Method	Details	Software
molecular dynamics	MDSA SCULPTOR-CNS TIP3P	TopSpin
simulated annealing	MDSA SCULPTOR-CNS TIP3P	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3	Bruker Biospin
2	processing	NMRPipe	11.2	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	peak picking	Sparky	3.115	Goddard
4	chemical shift assignment	Sparky	3.115	Goddard
5	chemical shift assignment	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
6	structure calculation	CNS	1.21	Brunger, Adams, Clore, Gros, Nilges and Read
7	structure calculation	SCULPTOR	3.1	Charavay, Eynard, Hus, Bouvignies and Blackledge
8	refinement	CNS	1.21	Brunger, Adams, Clore, Gros, Nilges and Read
9	refinement	SCULPTOR	3.1	Charavay, Eynard, Hus, Bouvignies and Blackledge

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 8S8O | pdb_00008s8o

Solution Structure of cAMP-dependent Protein Kinase RII-alpha Subunit Dimerization and Docking Domain Complex with Microtubule Associated Protein 2c (84-111)

8S8O | pdb_00008s8o