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Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBH37 (space group p21)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8S2F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.01 M MnCl2
0.1 M sodium citrate pH 5.6
2.5 M 1,6-hexanediol
Crystal Properties Matthews coefficient Solvent content 2.85 56.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.09 α = 90 b = 75.57 β = 89.99 c = 113.16 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.91840 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 62.924 73.5 0.072 0.997 5.4 1.9 18923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 0.368 0.659 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 62.924 18917 946 73.123 0.251 0.2478 0.2507 0.3096 0.3175 34.761
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.009 -0.022 -0.006 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.564 r_dihedral_angle_3_deg 20.714 r_dihedral_angle_4_deg 18.018 r_lrange_it 7.027 r_lrange_other 7.026 r_dihedral_angle_1_deg 6.128 r_scangle_it 5.422 r_scangle_other 5.422 r_mcangle_it 4.047 r_mcangle_other 4.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.564 r_dihedral_angle_3_deg 20.714 r_dihedral_angle_4_deg 18.018 r_lrange_it 7.027 r_lrange_other 7.026 r_dihedral_angle_1_deg 6.128 r_scangle_it 5.422 r_scangle_other 5.422 r_mcangle_it 4.047 r_mcangle_other 4.047 r_scbond_it 3.606 r_scbond_other 3.603 r_mcbond_it 2.857 r_mcbond_other 2.853 r_angle_other_deg 2.289 r_angle_refined_deg 1.686 r_nbd_other 0.268 r_symmetry_xyhbond_nbd_refined 0.265 r_symmetry_nbd_other 0.227 r_nbd_refined 0.225 r_nbtor_refined 0.167 r_xyhbond_nbd_other 0.166 r_symmetry_nbd_refined 0.161 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.088 r_symmetry_nbtor_other 0.068 r_symmetry_xyhbond_nbd_other 0.047 r_bond_other_d 0.034 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3008 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing