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Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBH37
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CQN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 294 0.1 M sodium citrate pH 5.6
20% PEG 4000
20% 2-propanol
Crystal Properties Matthews coefficient Solvent content 2.35 47.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.71 α = 90 b = 90.92 β = 90 c = 115.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.97625 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 90.92 100 0.132 0.999 13.4 12.5 11500
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 100 0.545 0.962 5.2 12.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.7 71.382 11450 596 99.948 0.226 0.2213 0.2241 0.3099 0.3088 45.645
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.017 0.009 -0.026
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.619 r_dihedral_angle_3_deg 21.65 r_dihedral_angle_4_deg 19.429 r_lrange_it 9.029 r_lrange_other 9.029 r_scangle_it 6.504 r_scangle_other 6.503 r_dihedral_angle_1_deg 5.872 r_mcangle_other 5.06 r_mcangle_it 5.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.619 r_dihedral_angle_3_deg 21.65 r_dihedral_angle_4_deg 19.429 r_lrange_it 9.029 r_lrange_other 9.029 r_scangle_it 6.504 r_scangle_other 6.503 r_dihedral_angle_1_deg 5.872 r_mcangle_other 5.06 r_mcangle_it 5.059 r_scbond_it 3.902 r_scbond_other 3.901 r_mcbond_it 3.186 r_mcbond_other 3.174 r_angle_other_deg 2.264 r_angle_refined_deg 1.457 r_nbd_other 0.275 r_symmetry_nbd_other 0.228 r_nbd_refined 0.219 r_symmetry_nbd_refined 0.188 r_nbtor_refined 0.161 r_symmetry_xyhbond_nbd_other 0.147 r_symmetry_xyhbond_nbd_refined 0.146 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.066 r_symmetry_nbtor_other 0.065 r_bond_other_d 0.034 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2888 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing