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NMR solution structure of the CysD2 domain of MUC2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.7 mM 1H cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 2 2D 1H-15N HSQC 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 3 2D 1H-13C HSQC 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 4 3D HNCA 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 5 3D HN(CO)CA 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 6 3D HNCACB 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 7 3D HCCH-TOCSY 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 800 8 3D 1H-13C NOESY aliphatic 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 9 3D 1H-15N NOESY 0.3 mM [U-100% 13C; U-100% 15N] cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900 10 2D 1H-13C HSQC15 0.6 mM 15N Cysteine, 15N Valine cysD2 90% H2O/10% D2O 100 mM 7 Atmospheric pressure bar 318 Bruker AVANCE III HD 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 900 2 Bruker AVANCE III HD 800
NMR Refinement Method Details Software ENERGY MINIMIZATION 6 CALCIUM BOND DISTANCES, 14 HYDROGEN BONDS, 5 DISULFIDE BONDS, YASARA YASARA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CcpNmr Analysis 2.4.2 CCPN 2 peak picking CcpNmr Analysis 2.4.2 CCPN 3 processing TopSpin Bruker Biospin 4 refinement YASARA 2.5 Yasaara inc. 5 structure calculation CYANA 3.0 Peter Guentert