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Galectin-3 with a small molecule inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Internal unliganded structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 60% "Tacsimate" pH 7.0 (Hampton Research)
Crystal Properties Matthews coefficient Solvent content 1.96 37.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.804 α = 90 b = 57.28 β = 90 c = 61.85 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2021-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 42.02 99.3 0.123 0.997 6.59 3.37 42445
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 1.72 0.247 0.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 42.004 20445 1042 99.966 0.194 0.1916 0.1954 0.2362 0.2366 18.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.832 -2.88 1.048
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.34 r_dihedral_angle_3_deg 11.718 r_lrange_it 11.147 r_lrange_other 11.099 r_scangle_it 8.316 r_scangle_other 8.312 r_dihedral_angle_1_deg 7.611 r_mcangle_other 6.712 r_mcangle_it 6.71 r_scbond_it 5.733
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.34 r_dihedral_angle_3_deg 11.718 r_lrange_it 11.147 r_lrange_other 11.099 r_scangle_it 8.316 r_scangle_other 8.312 r_dihedral_angle_1_deg 7.611 r_mcangle_other 6.712 r_mcangle_it 6.71 r_scbond_it 5.733 r_scbond_other 5.702 r_mcbond_it 4.674 r_mcbond_other 4.65 r_dihedral_angle_2_deg 4.473 r_rigid_bond_restr 3.352 r_angle_refined_deg 1.612 r_angle_other_deg 0.587 r_symmetry_nbd_other 0.203 r_nbd_refined 0.2 r_symmetry_xyhbond_nbd_refined 0.19 r_nbd_other 0.173 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.13 r_symmetry_nbd_refined 0.114 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.084 r_chiral_restr_other 0.011 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_xyhbond_nbd_other 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1104 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction XSCALE data scaling PHASER phasing