☰ Navigation Tabs
The crystal structure of DNA-bound human MutSbeta (MSH2/MSH3_G901D) in the canonical mismatch bound conformation with ADP bound in MSH2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8RAU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 0.1 M MES pH 6.5 -7.5, 0.2 M Ammonium Acetate, 20 - 25 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.3 46.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.376 α = 67.9 b = 90.396 β = 86.99 c = 96.323 γ = 74.66
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00001 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 47.3 95.5 0.037 13.16 1.8 53080
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.94 0.437
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.69 47.3 52315 765 95.64 0.22888 0.22834 0.2306 0.26525 0.2625 RANDOM 88.414
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.25 -0.57 1.5 0.8 0.84 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.915 r_dihedral_angle_3_deg 14.155 r_dihedral_angle_4_deg 12.804 r_dihedral_angle_1_deg 6.086 r_long_range_B_refined 1.863 r_long_range_B_other 1.861 r_angle_refined_deg 1.278 r_angle_other_deg 1.079 r_mcangle_it 0.979 r_mcangle_other 0.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.915 r_dihedral_angle_3_deg 14.155 r_dihedral_angle_4_deg 12.804 r_dihedral_angle_1_deg 6.086 r_long_range_B_refined 1.863 r_long_range_B_other 1.861 r_angle_refined_deg 1.278 r_angle_other_deg 1.079 r_mcangle_it 0.979 r_mcangle_other 0.979 r_scangle_other 0.753 r_mcbond_it 0.547 r_mcbond_other 0.547 r_scbond_it 0.422 r_scbond_other 0.422 r_chiral_restr 0.048 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13586 Nucleic Acid Atoms 774 Solvent Atoms 55 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing