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MutSbeta bound to compound CHDI-00915542 in the canonical DNA-mismatch bound form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3THY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.1 MES pH 7.25; 0.2 M NH4 Acetate; 20- 25% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.5 50.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.222 α = 110.029 b = 104.789 β = 91.198 c = 121.263 γ = 110.501
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9999 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.82 112.46 92.7 0.058 0.075 0.047 0.985 5.5 2.3 73299
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.82 3.12 59.5 0.514 0.66 0.406 0.701 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.82 112.46 73299 3646 70.106 0.203 0.2013 0.2048 0.2305 0.2343 66.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.228 -0.237 0.342 -0.072 -0.212 0.436
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.616 r_dihedral_angle_3_deg 15.252 r_dihedral_angle_4_deg 14.5 r_lrange_it 7.291 r_lrange_other 7.291 r_dihedral_angle_1_deg 6.538 r_mcangle_it 4.54 r_mcangle_other 4.54 r_scangle_it 4.184 r_scangle_other 4.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.616 r_dihedral_angle_3_deg 15.252 r_dihedral_angle_4_deg 14.5 r_lrange_it 7.291 r_lrange_other 7.291 r_dihedral_angle_1_deg 6.538 r_mcangle_it 4.54 r_mcangle_other 4.54 r_scangle_it 4.184 r_scangle_other 4.184 r_mcbond_it 2.642 r_mcbond_other 2.642 r_scbond_it 2.372 r_scbond_other 2.372 r_angle_refined_deg 1.304 r_angle_other_deg 1.115 r_nbd_refined 0.148 r_nbtor_refined 0.148 r_nbd_other 0.146 r_symmetry_nbd_other 0.143 r_symmetry_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.11 r_xyhbond_nbd_refined 0.096 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.048 r_ncsr_local_group_2 0.048 r_ncsr_local_group_3 0.047 r_ncsr_local_group_1 0.042 r_ncsr_local_group_4 0.022 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27707 Nucleic Acid Atoms 1802 Solvent Atoms 69 Heterogen Atoms 139
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing