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Polysaccharide lyase BtPL33HA (BT4410) Apo form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other unpublished structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 20 % PEG 6000
0.1M MES pH6.0
0.1 M Ammonium chloride
20 mg/ml
Crystal Properties Matthews coefficient Solvent content 2.53 51.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.529 α = 90 b = 137.672 β = 90 c = 202.506 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9999 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 113.85 90.8 0.99 6.6 5.9 73386
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.17 0.503 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.03 113.85 73385 3607 75.003 0.194 0.1912 0.1978 0.2505 0.2539 31.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.995 0.136 0.859
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.388 r_dihedral_angle_3_deg 16.952 r_dihedral_angle_6_deg 15.341 r_dihedral_angle_1_deg 7.535 r_lrange_it 6.731 r_lrange_other 6.726 r_scangle_it 5.714 r_scangle_other 5.713 r_scbond_it 3.856 r_scbond_other 3.856
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.388 r_dihedral_angle_3_deg 16.952 r_dihedral_angle_6_deg 15.341 r_dihedral_angle_1_deg 7.535 r_lrange_it 6.731 r_lrange_other 6.726 r_scangle_it 5.714 r_scangle_other 5.713 r_scbond_it 3.856 r_scbond_other 3.856 r_mcangle_it 3.546 r_mcangle_other 3.546 r_angle_refined_deg 2.539 r_mcbond_it 2.495 r_mcbond_other 2.49 r_angle_other_deg 0.817 r_metal_ion_refined 0.25 r_symmetry_nbd_refined 0.226 r_nbd_refined 0.224 r_nbd_other 0.208 r_symmetry_xyhbond_nbd_refined 0.204 r_symmetry_nbd_other 0.201 r_nbtor_refined 0.194 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.111 r_ncsr_local_group_1 0.11 r_symmetry_nbtor_other 0.097 r_symmetry_xyhbond_nbd_other 0.057 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9816 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction STARANISO data scaling MOLREP phasing