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Pseudomonas aeruginosa FabF C164A in complex with N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-(4-methoxyphenoxy)acetamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other In-house determined apo structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.24M ammonium formate and 35% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.16 43.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.947 α = 90 b = 104.339 β = 90 c = 144.117 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2023-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.8731 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.087 72.655 99.8 0.993 6.2 6.7 45462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.14 97.7 0.436 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.087 72.655 45428 2472 99.794 0.192 0.1889 0.1884 0.2542 0.2513 41.496
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.66 0.891 0.769
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 49.717 r_dihedral_angle_2_deg 19.154 r_dihedral_angle_6_deg 15.605 r_dihedral_angle_3_deg 15.187 r_lrange_other 8.982 r_lrange_it 8.98 r_scangle_it 7.593 r_scangle_other 7.592 r_dihedral_angle_1_deg 7.563 r_scbond_it 5.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 49.717 r_dihedral_angle_2_deg 19.154 r_dihedral_angle_6_deg 15.605 r_dihedral_angle_3_deg 15.187 r_lrange_other 8.982 r_lrange_it 8.98 r_scangle_it 7.593 r_scangle_other 7.592 r_dihedral_angle_1_deg 7.563 r_scbond_it 5.338 r_scbond_other 5.338 r_mcangle_it 5.172 r_mcangle_other 5.172 r_mcbond_it 4.023 r_mcbond_other 4.023 r_angle_refined_deg 2.108 r_angle_other_deg 0.911 r_nbd_refined 0.182 r_nbtor_refined 0.155 r_symmetry_nbd_other 0.139 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.107 r_symmetry_xyhbond_nbd_refined 0.094 r_nbd_other 0.086 r_symmetry_nbd_refined 0.081 r_ncsr_local_group_1 0.077 r_symmetry_nbtor_other 0.071 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6058 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing