☰ Navigation Tabs
Human NDPK-C in complex with cAMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.4 291 6% PEG 3350, 150 mM Li2SO4, 100 mM Tri-sodium citrate pH 5.4
Crystal Properties Matthews coefficient Solvent content 1.86 34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.021 α = 108.702 b = 67.411 β = 112.352 c = 68.147 γ = 100.85
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M Vertical CRL / horizontal eliptical mirror 2021-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.9677 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 45.036 97.3 0.127 0.144 0.067 0.993 6.2 4.6 71473
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.81 88.4 1.014 1.153 0.54 0.612 1.2 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.774 45.036 71473 2091 97.254 0.167 0.1655 0.2103 0.2119 25.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 1.05 -0.008 0.284 0.082 -1.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.356 r_dihedral_angle_6_deg 15.135 r_dihedral_angle_2_deg 13.265 r_lrange_it 7.276 r_lrange_other 7.27 r_dihedral_angle_1_deg 6.254 r_scangle_it 6.052 r_scangle_other 6.051 r_scbond_it 3.987 r_scbond_other 3.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.356 r_dihedral_angle_6_deg 15.135 r_dihedral_angle_2_deg 13.265 r_lrange_it 7.276 r_lrange_other 7.27 r_dihedral_angle_1_deg 6.254 r_scangle_it 6.052 r_scangle_other 6.051 r_scbond_it 3.987 r_scbond_other 3.987 r_mcangle_other 3.055 r_mcangle_it 3.054 r_mcbond_it 2.182 r_mcbond_other 2.173 r_angle_refined_deg 1.664 r_angle_other_deg 0.586 r_symmetry_xyhbond_nbd_other 0.275 r_nbd_other 0.236 r_nbd_refined 0.22 r_symmetry_nbd_other 0.197 r_symmetry_xyhbond_nbd_refined 0.196 r_nbtor_refined 0.188 r_symmetry_nbd_refined 0.187 r_xyhbond_nbd_refined 0.14 r_ncsr_local_group_1 0.103 r_ncsr_local_group_4 0.099 r_ncsr_local_group_2 0.094 r_ncsr_local_group_8 0.094 r_ncsr_local_group_12 0.089 r_ncsr_local_group_15 0.089 r_ncsr_local_group_5 0.088 r_ncsr_local_group_7 0.088 r_ncsr_local_group_13 0.088 r_ncsr_local_group_6 0.087 r_ncsr_local_group_3 0.086 r_ncsr_local_group_10 0.085 r_chiral_restr 0.084 r_symmetry_nbtor_other 0.084 r_ncsr_local_group_9 0.082 r_ncsr_local_group_14 0.08 r_ncsr_local_group_11 0.066 r_xyhbond_nbd_other 0.028 r_dihedral_angle_other_2_deg 0.015 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7285 Nucleic Acid Atoms Solvent Atoms 408 Heterogen Atoms 147
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling REFMAC phasing