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Crystal structure of Lymantria dispar CPV14 polyhedra single crystal
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A98
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 IN CELL 7.5 300 In vivo
Crystal Properties Matthews coefficient Solvent content 1.6 22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.102 α = 90 b = 103.102 β = 90 c = 103.102 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 9M 2021-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE VMXm 0.5814 Diamond VMXm
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 42.1 90.69 0.304 0.146 0.911 3.7 4.5 40615
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 57.69 0.91 0.696 0.356 0.5 2.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.3 36.45 1.34 40615 3467 82.83 0.2304 0.2291 0.2294 0.2566 0.2572 Random selection 10.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.4707 f_angle_d 0.8821 f_chiral_restr 0.0868 f_plane_restr 0.0071 f_bond_d 0.0036
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1959 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 33
Software Software Software Name Purpose PHENIX refinement DIALS data reduction xia2.multiplex data scaling PHASER phasing