☰ Navigation Tabs
Human Carbonic Anhydrase II in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol at pH 9.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 296 1.5 M sodium citrate, 50 mM Tris pH pH 9.0
Crystal Properties Matthews coefficient Solvent content 2.11 41.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.4 α = 90 b = 41.58 β = 104.56 c = 72.53 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.34 41.072 97.7 0.069 0.074 0.996 12.7 6.1 53818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.34 1.36 94.8 0.211 0.236 0.959 4.4 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.34 41.072 53788 2681 97.704 0.115 0.1127 0.1513 0.179 14.142
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.326 0.298 -0.233 0.356
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.844 r_dihedral_angle_4_deg 24.402 r_dihedral_angle_3_deg 12.002 r_rigid_bond_restr 7.535 r_dihedral_angle_1_deg 6.936 r_lrange_it 4.498 r_scangle_it 4.473 r_scangle_other 4.472 r_lrange_other 4.463 r_scbond_it 3.771
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.844 r_dihedral_angle_4_deg 24.402 r_dihedral_angle_3_deg 12.002 r_rigid_bond_restr 7.535 r_dihedral_angle_1_deg 6.936 r_lrange_it 4.498 r_scangle_it 4.473 r_scangle_other 4.472 r_lrange_other 4.463 r_scbond_it 3.771 r_scbond_other 3.769 r_mcangle_other 2.866 r_mcangle_it 2.865 r_mcbond_it 2.42 r_mcbond_other 2.419 r_angle_refined_deg 2.208 r_angle_other_deg 1.553 r_symmetry_nbd_refined 0.276 r_nbd_other 0.236 r_nbd_refined 0.235 r_symmetry_nbd_other 0.203 r_nbtor_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.145 r_chiral_restr 0.128 r_xyhbond_nbd_refined 0.118 r_symmetry_nbtor_other 0.094 r_metal_ion_refined 0.049 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2045 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing