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Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)methylsulfonamido)methyl)phenyl)glycine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 296 1.5 M sodium citrate, 50 mM Tris pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.12 42.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.59 α = 90 b = 41.59 β = 104.52 c = 72.48 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.9718 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.11 50 96.3 0.055 0.06 0.999 14.7 5.8 94466
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.11 1.14 69.4 0.462 0.557 0.756 2.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.11 50 94466 4673 96.311 0.117 0.1163 0.1162 0.1397 0.139 15.508
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.036 -0.041 0.009 -0.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.332 r_dihedral_angle_4_deg 25.003 r_rigid_bond_restr 17.857 r_dihedral_angle_3_deg 11.712 r_dihedral_angle_1_deg 6.909 r_scangle_it 5.712 r_scangle_other 5.71 r_lrange_it 5.308 r_lrange_other 5.203 r_scbond_it 5.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.332 r_dihedral_angle_4_deg 25.003 r_rigid_bond_restr 17.857 r_dihedral_angle_3_deg 11.712 r_dihedral_angle_1_deg 6.909 r_scangle_it 5.712 r_scangle_other 5.71 r_lrange_it 5.308 r_lrange_other 5.203 r_scbond_it 5.152 r_scbond_other 5.151 r_mcangle_other 4.108 r_mcangle_it 4.102 r_mcbond_it 2.998 r_mcbond_other 2.997 r_angle_refined_deg 2.148 r_angle_other_deg 1.593 r_symmetry_nbd_refined 0.262 r_nbd_refined 0.242 r_nbd_other 0.204 r_symmetry_nbd_other 0.199 r_xyhbond_nbd_refined 0.198 r_symmetry_xyhbond_nbd_other 0.186 r_symmetry_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.18 r_chiral_restr 0.133 r_symmetry_nbtor_other 0.093 r_metal_ion_refined 0.064 r_bond_refined_d 0.018 r_gen_planes_refined 0.013 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2038 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing