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Structure of Legionella pneumophila Lcl C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2.0 M (NH4)2SO4, 0.1 M bis-tris
Crystal Properties Matthews coefficient Solvent content 1.96 37.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.6 α = 90 b = 52.87 β = 112.09 c = 97.27 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97969 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 45.56 99.5 0.058 16.7 3.3 34006 17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 97.3 0.148 6.7 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.9 45.56 34006 1659 99.328 0.16 0.1582 0.1631 0.1878 0.1949 17.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.423 -0.141 -0.434 0.731
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.54 r_dihedral_angle_3_deg 11.851 r_dihedral_angle_1_deg 6.73 r_lrange_it 6.238 r_lrange_other 6.181 r_dihedral_angle_2_deg 4.87 r_scangle_it 4.318 r_scangle_other 4.317 r_scbond_it 2.826 r_scbond_other 2.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.54 r_dihedral_angle_3_deg 11.851 r_dihedral_angle_1_deg 6.73 r_lrange_it 6.238 r_lrange_other 6.181 r_dihedral_angle_2_deg 4.87 r_scangle_it 4.318 r_scangle_other 4.317 r_scbond_it 2.826 r_scbond_other 2.825 r_mcangle_it 1.669 r_mcangle_other 1.669 r_mcbond_it 1.219 r_mcbond_other 1.219 r_angle_refined_deg 1.18 r_angle_other_deg 0.651 r_symmetry_xyhbond_nbd_refined 0.237 r_symmetry_nbd_other 0.202 r_nbd_refined 0.2 r_nbtor_refined 0.181 r_nbd_other 0.156 r_xyhbond_nbd_refined 0.154 r_symmetry_nbd_refined 0.108 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.057 r_ncsr_local_group_1 0.057 r_ncsr_local_group_2 0.055 r_ncsr_local_group_3 0.043 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3087 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling SHARP phasing