☰ Navigation Tabs
N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH (1R,1'R)-7,7'-(ethane-1,2-diylbis(oxy))bis(1,3-dimethyl-1,3-dihydro-2H-benzo[d]azepin-2-one)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other in house structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 0.1M Tris pH8.5, 12% w/v 4K
Crystal Properties Matthews coefficient Solvent content 2.21 44.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.265 α = 89.973 b = 41.879 β = 89.948 c = 105.383 γ = 89.882
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 52.69 92.8 0.043 0.975 18.3 2.1 35040
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.18 90.6 0.128 0.878 6.7 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.952 35.128 34031 1609 90.388 0.196 0.192 0.2359 0.2701 0.3282 16.077
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.145 -2.068 8.773 4.455 -3.615 -4.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.625 r_dihedral_angle_6_deg 15.435 r_dihedral_angle_1_deg 7.087 r_dihedral_angle_2_deg 6.068 r_angle_refined_deg 1.403 r_angle_other_deg 0.454 r_xyhbond_nbd_refined 0.259 r_symmetry_xyhbond_nbd_refined 0.249 r_nbd_refined 0.241 r_symmetry_nbd_other 0.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.625 r_dihedral_angle_6_deg 15.435 r_dihedral_angle_1_deg 7.087 r_dihedral_angle_2_deg 6.068 r_angle_refined_deg 1.403 r_angle_other_deg 0.454 r_xyhbond_nbd_refined 0.259 r_symmetry_xyhbond_nbd_refined 0.249 r_nbd_refined 0.241 r_symmetry_nbd_other 0.199 r_nbd_other 0.19 r_nbtor_refined 0.189 r_symmetry_nbd_refined 0.173 r_symmetry_nbtor_other 0.076 r_symmetry_xyhbond_nbd_other 0.076 r_chiral_restr 0.063 r_xyhbond_nbd_other 0.047 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4226 Nucleic Acid Atoms Solvent Atoms 770 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling