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Structure of Fap1, a domain of the accessory Sec-dependent serine-rich glycoprotein adhesin from Streptococcus oralis, solved at wavelength 3.06 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M BIS-Tris 5.5 25 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.51 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.81 α = 90 b = 30.4 β = 127.04 c = 90.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 12M 2017-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 3.066 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.973 65.53 84.33 0.1122 0.1169 0.03096 0.99 20.29 12.6 17626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.973 2.043 0.962 8.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.973 65.53 16726 900 84.36 0.18316 0.1812 0.22042 0.2688 RANDOM 14.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 0.41 -1.36 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.144 r_long_range_B_refined 10.819 r_long_range_B_other 10.813 r_dihedral_angle_1_deg 6.855 r_dihedral_angle_2_deg 6.229 r_scangle_other 2.49 r_mcangle_it 1.582 r_mcangle_other 1.582 r_scbond_it 1.564 r_scbond_other 1.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.144 r_long_range_B_refined 10.819 r_long_range_B_other 10.813 r_dihedral_angle_1_deg 6.855 r_dihedral_angle_2_deg 6.229 r_scangle_other 2.49 r_mcangle_it 1.582 r_mcangle_other 1.582 r_scbond_it 1.564 r_scbond_other 1.564 r_angle_refined_deg 1.499 r_mcbond_it 0.933 r_mcbond_other 0.933 r_angle_other_deg 0.486 r_chiral_restr 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1904 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling HKL2Map phasing