8PWR | pdb_00008pwr

TINA-conjugated antiparallel DNA triplex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	279.6	Bruker AVANCE 600
2	2D 1H-1H TOCSY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	279.6	Bruker AVANCE 600
3	2D 1H-1H NOESY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	279.6	Bruker AVANCE 600
4	2D DQF-COSY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	300.4	Bruker AVANCE 800
5	2D 1H-1H NOESY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	300.4	Bruker AVANCE 600
6	2D 1H-1H TOCSY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	300.4	Bruker AVANCE 600
7	2D 1H-1H NOESY	0.5 mM Triplex-TINA	90% H2O/10% D2O	125 mM	7	1 atm	300.4	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	15
Conformers Submitted Total Number	10
Representative Model	2 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	peak picking	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL
2	structure calculation	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
5	chemical shift assignment	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL
4	collection	TopSpin		Bruker Biospin