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ChiLob 7/4 H2 HC-K223C/C224S Kappa LC-C214S F(ab')2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TKE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294.15 0.1M TRIS, 15% PEG 4000, 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.81 56.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.995 α = 90 b = 95.818 β = 90 c = 151.924 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 45 PIXEL DECTRIS PILATUS 12M 2022-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 2.7552 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 151.92 85.72 0.058 0.061 0.018 0.997 16.93 9.58 71110
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.97 73.7 1.879 2.025 0.729 0.274 0.283 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.93 81.177 71045 3525 85.644 0.205 0.2029 0.2049 0.2387 0.242 61.604
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.042 2.551 -1.509
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.209 r_dihedral_angle_3_deg 10.896 r_lrange_it 7.83 r_lrange_other 7.83 r_dihedral_angle_1_deg 7.333 r_scangle_it 5.44 r_scangle_other 5.439 r_dihedral_angle_2_deg 4.997 r_mcangle_other 4.491 r_mcangle_it 4.489
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.209 r_dihedral_angle_3_deg 10.896 r_lrange_it 7.83 r_lrange_other 7.83 r_dihedral_angle_1_deg 7.333 r_scangle_it 5.44 r_scangle_other 5.439 r_dihedral_angle_2_deg 4.997 r_mcangle_other 4.491 r_mcangle_it 4.489 r_scbond_it 3.569 r_scbond_other 3.569 r_mcbond_it 2.928 r_mcbond_other 2.926 r_angle_refined_deg 0.794 r_angle_other_deg 0.298 r_symmetry_nbd_refined 0.234 r_nbd_other 0.216 r_symmetry_nbd_other 0.189 r_nbd_refined 0.171 r_nbtor_refined 0.169 r_symmetry_xyhbond_nbd_refined 0.161 r_xyhbond_nbd_refined 0.126 r_ncsr_local_group_1 0.095 r_ncsr_local_group_2 0.083 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.039 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6632 Nucleic Acid Atoms Solvent Atoms 322 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement GDA data collection DIALS data reduction xia2 data scaling MOLREP phasing Coot model building