8PRN

E1M, K50A, R52A, D97A, E99A MUTANT OF RH. BLASTICA PORIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.2pH 7.2
Crystal Properties
Matthews coefficientSolvent content
4.2666

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.75α = 90
b = 103.75β = 90
c = 124.95γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293AREA DETECTORSIEMENS1996-12-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.912.885.70.0380.03815.92.53485330.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.97510.190.192.51.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIFFERENCE FOURIERTHROUGHOUTPDB ENTRY 1PRN2.325.9120686209592.90.1770.215SAME AS WILD-TYPE32.7
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor19.4
p_transverse_tor18.6
p_planar_tor4.1
p_scangle_it3.967
p_scbond_it2.674
p_mcangle_it1.739
p_mcbond_it1.35
p_multtor_nbd0.249
p_singtor_nbd0.186
p_hb_or_metal_coord0.174
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor19.4
p_transverse_tor18.6
p_planar_tor4.1
p_scangle_it3.967
p_scbond_it2.674
p_mcangle_it1.739
p_mcbond_it1.35
p_multtor_nbd0.249
p_singtor_nbd0.186
p_hb_or_metal_coord0.174
p_xyhbond_nbd0.174
p_chiral_restr0.159
p_planar_d0.047
p_angle_d0.036
p_plane_restr0.0197
p_bond_d0.018
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2146
Nucleic Acid Atoms
Solvent Atoms98
Heterogen Atoms63

Software

Software
Software NamePurpose
CCP4model building
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
CCP4phasing