☰ Navigation Tabs
Molecular Docking of SPF30 Tudor domain with synthetic inhibitor 4-(pyridin-2-yl)thiazol-2-amine
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800 2 2D 1H-13C HSQC aromatic 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800 3 2D 1H-13C HSQC aliphatic 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800 4 3D HCCH-TOCSY 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800 5 2D NOESY w1-13C-filtered 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800 7 2D NOESY w2-13C-filtered 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800 6 3D NOESY w2-w1-13C filtered 1 mM [U-13C; U-15N] SPF30(65-128), 20 mM NA- cmp13, 20 mM NA- sodium phosphate, 50 mM NA- NaCl, 5 mM NA- DTT 100% D2O 70 mM 6.5 1 atm 298 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing HADDOCK
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 400 Conformers Submitted Total Number 4 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CARA 1.9.1.7 Keller and Wuthrich 2 peak picking CARA 1.9.1.7 Keller and Wuthrich 4 structure calculation HADDOCK Bonvin