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FKBP12 in complex with PROTAC 6a2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PPN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.36 Na/K tartrate, 0.2M ammonium citrate, 0.1M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.2 44.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.993 α = 90 b = 36.506 β = 102.186 c = 44.217 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 2M 2021-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.918400 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 43.22 99.9 0.055 0.066 0.036 0.999 11.7 6.3 32330
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 1.318 1.599 0.892 0.625 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 31.791 32324 1615 99.91 0.153 0.1516 0.1756 0.1918 17.843
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.127 0.489 -0.995 -0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.602 r_dihedral_angle_3_deg 13.366 r_dihedral_angle_1_deg 7.191 r_dihedral_angle_2_deg 6.487 r_rigid_bond_restr 4.118 r_lrange_it 3.892 r_lrange_other 3.127 r_scangle_it 2.314 r_scangle_other 2.314 r_angle_refined_deg 1.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.602 r_dihedral_angle_3_deg 13.366 r_dihedral_angle_1_deg 7.191 r_dihedral_angle_2_deg 6.487 r_rigid_bond_restr 4.118 r_lrange_it 3.892 r_lrange_other 3.127 r_scangle_it 2.314 r_scangle_other 2.314 r_angle_refined_deg 1.969 r_mcangle_it 1.815 r_mcangle_other 1.813 r_scbond_it 1.776 r_scbond_other 1.774 r_chiral_restr_other 1.576 r_mcbond_it 1.392 r_mcbond_other 1.392 r_angle_other_deg 1.159 r_chiral_restr 0.307 r_symmetry_xyhbond_nbd_refined 0.25 r_nbd_refined 0.218 r_symmetry_nbd_other 0.213 r_symmetry_nbd_refined 0.188 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.168 r_nbd_other 0.167 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 820 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing