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Pseudomonas aeruginosa FabF C164A mutant in complex with N-isopropyl-1H-imidazole-4-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CN8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.20M ammonium formate and 31.2% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.11 41.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.99 α = 90 b = 103.76 β = 90 c = 141.61 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.03321 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 48.71 99.7 0.999 17.96 7.47 61715
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.98 98.9 0.749 2.27 7.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 48.71 59614 2101 99.66 0.15906 0.15773 0.1688 0.19588 0.2021 RANDOM 34.912
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 0.59 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.755 r_dihedral_angle_4_deg 20.029 r_dihedral_angle_3_deg 14.016 r_long_range_B_refined 8.239 r_long_range_B_other 8.236 r_scangle_other 6.835 r_dihedral_angle_1_deg 6.696 r_scbond_it 4.622 r_scbond_other 4.622 r_mcangle_it 3.619
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.755 r_dihedral_angle_4_deg 20.029 r_dihedral_angle_3_deg 14.016 r_long_range_B_refined 8.239 r_long_range_B_other 8.236 r_scangle_other 6.835 r_dihedral_angle_1_deg 6.696 r_scbond_it 4.622 r_scbond_other 4.622 r_mcangle_it 3.619 r_mcangle_other 3.619 r_mcbond_other 2.708 r_mcbond_it 2.701 r_angle_refined_deg 1.58 r_angle_other_deg 1.459 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6049 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing