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SelDeg51 in complex with FKBP51FK1 domain and pVHL:EloB:EloC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA experimental model PDB 6HR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 15% PEG3350, 0.2 M tri-sodium citrate, 0.1 M HEPES-NaOH pH 7.5 and 10% glycol
Crystal Properties Matthews coefficient Solvent content 3.1 60.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.646 α = 90 b = 68.425 β = 114.453 c = 159.256 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 48.74 99.1 0.088 0.113 0.07 0.997 12 4.6 33478
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.94 0.523 0.668 0.409 0.925 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 48.739 33477 1674 98.889 0.213 0.2104 0.2098 0.2607 0.2614 74.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.195 6.89 -9.174 -0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.272 r_dihedral_angle_6_deg 15.431 r_dihedral_angle_2_deg 10.829 r_lrange_other 8.86 r_lrange_it 8.859 r_dihedral_angle_1_deg 7.862 r_scangle_it 6.976 r_scangle_other 6.975 r_mcangle_it 6.707 r_mcangle_other 6.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.272 r_dihedral_angle_6_deg 15.431 r_dihedral_angle_2_deg 10.829 r_lrange_other 8.86 r_lrange_it 8.859 r_dihedral_angle_1_deg 7.862 r_scangle_it 6.976 r_scangle_other 6.975 r_mcangle_it 6.707 r_mcangle_other 6.707 r_scbond_it 4.703 r_scbond_other 4.702 r_mcbond_it 4.515 r_mcbond_other 4.514 r_angle_refined_deg 1.581 r_chiral_restr_other 1.203 r_angle_other_deg 0.793 r_symmetry_xyhbond_nbd_refined 0.275 r_nbd_refined 0.227 r_symmetry_nbd_other 0.2 r_nbd_other 0.19 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.169 r_ncsr_local_group_1 0.103 r_ncsr_local_group_4 0.101 r_symmetry_nbd_refined 0.099 r_ncsr_local_group_3 0.096 r_symmetry_nbtor_other 0.084 r_ncsr_local_group_2 0.083 r_chiral_restr 0.059 r_symmetry_xyhbond_nbd_other 0.036 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7018 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 192
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing