8P79
Cryo-EM structure of CAK with averaged inhibitor density
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| r_dihedral_angle_2_deg | 32.913 |
| r_dihedral_angle_4_deg | 17.264 |
| r_dihedral_angle_3_deg | 14.417 |
| r_long_range_B_refined | 7.741 |
| r_long_range_B_other | 7.739 |
| r_dihedral_angle_1_deg | 5.638 |
| r_scangle_other | 4.892 |
| r_mcangle_it | 4.395 |
| r_mcangle_other | 4.394 |
| r_scbond_it | 3 |
| Sample |
|---|
| CDK-activating kinase |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 2060053 |
| Reported Resolution (Å) | 1.7 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (8ORM) | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | RIGID BODY FIT | ||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | TFS FALCON 4i (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 70 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | TFS KRIOS |
| Minimum Defocus (nm) | 400 |
| Maximum Defocus (nm) | 1900 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | |
| Calibrated Magnification | 245614 |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | cryoSPARC | v3.3.1 |
| IMAGE ACQUISITION | EPU | |
| CTF CORRECTION | RELION | 4.0 beta |
| CTF CORRECTION | cryoSPARC | v3.3.1 |
| MODEL FITTING | UCSF ChimeraX | 1.2.5 |
| MODEL REFINEMENT | REFMAC | 5.8.0267 |
| INITIAL EULER ASSIGNMENT | RELION | 4.0 beta |
| FINAL EULER ASSIGNMENT | RELION | 4.0 beta |
| CLASSIFICATION | RELION | 4.0 beta |
| RECONSTRUCTION | RELION | 4.0 beta |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | ||||
