☰ Navigation Tabs
Human cyclin-dependent kinase 2 in complex with inhibitor HB-29260
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other 4erw PROPRIETARY MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 277 MES pH7.0, PEG3350, ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.11 41.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.36 α = 90 b = 72.685 β = 90 c = 72.959 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2022-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9999 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.618 51.49 90.6 0.12 0.13 0.06 0.99 8.8 4.3 8294
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.618 2.66 70.7 0.59 0.74 0.44 0.739 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.618 51.49 7872 417 90.52 0.22304 0.21971 0.28261 0.2573 RANDOM 50.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.46 0.14 3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.166 r_dihedral_angle_3_deg 16.264 r_dihedral_angle_4_deg 15.956 r_dihedral_angle_1_deg 6.702 r_long_range_B_refined 3.217 r_long_range_B_other 3.194 r_angle_refined_deg 1.511 r_angle_other_deg 1.093 r_mcangle_it 0.936 r_mcangle_other 0.935
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.166 r_dihedral_angle_3_deg 16.264 r_dihedral_angle_4_deg 15.956 r_dihedral_angle_1_deg 6.702 r_long_range_B_refined 3.217 r_long_range_B_other 3.194 r_angle_refined_deg 1.511 r_angle_other_deg 1.093 r_mcangle_it 0.936 r_mcangle_other 0.935 r_scangle_other 0.712 r_mcbond_it 0.508 r_mcbond_other 0.508 r_scbond_it 0.384 r_scbond_other 0.384 r_chiral_restr 0.056 r_gen_planes_refined 0.008 r_bond_refined_d 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2212 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 31
Software Software Software Name Purpose autoPROC data reduction XDS data reduction MOSFLM data reduction autoPROC data scaling Aimless data scaling REFMAC refinement PHASER phasing