☰ Navigation Tabs
Solution NMR structure of Notch1 TMD
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 500 uM Notch1 WT TMD trifluoroethanol/water 80/20 6.5 1 bar 300 Bruker AVANCE III 600 2 2D 1H-1H TOCSY 500 uM Notch1 WT TMD trifluoroethanol/water 80/20 6.5 1 bar 300 Bruker AVANCE III 600 3 2D 1H-13C HSQC 500 uM Notch1 WT TMD trifluoroethanol/water 80/20 6.5 1 bar 300 Bruker AVANCE III 600 4 2D 1H-15N HSQC 500 uM Notch1 WT TMD trifluoroethanol/water 80/20 6.5 1 bar 300 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 400 Conformers Submitted Total Number 40 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.2.1 Brunger, Adams, Clore, Gros, Nilges and Read 2 structure calculation ARIA 2.3.2 Linge, O'Donoghue and Nilges 3 chemical shift assignment CcpNmr Analysis 2.4.2 Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED. 4 peak picking CcpNmr Analysis 2.4.2 Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED.