☰ Navigation Tabs
VHH Z70 mutant 20 in interaction with PHF6 Tau peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7QCQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 0.095M tri-Sodium citrate pH 5.6, 19% isopropanol, 15% Glycerol
Crystal Properties Matthews coefficient Solvent content 3.06 59.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.309 α = 90 b = 135.309 β = 90 c = 35.508 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9786 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 44.29 97.5 0.071 0.072 0.015 0.999 31.5 40.8 28067
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.57 1.788 1.83 0.385 0.881 42.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.54 44.23 28067 1403 97.195 0.162 0.1598 0.1967 0.2068 28.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.003 0.001 0.003 -0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.805 r_dihedral_angle_3_deg 14.487 r_dihedral_angle_2_deg 7.316 r_dihedral_angle_1_deg 7.135 r_rigid_bond_restr 5.897 r_lrange_it 4.93 r_lrange_other 4.723 r_scangle_other 3.915 r_scangle_it 3.913 r_mcangle_other 3.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.805 r_dihedral_angle_3_deg 14.487 r_dihedral_angle_2_deg 7.316 r_dihedral_angle_1_deg 7.135 r_rigid_bond_restr 5.897 r_lrange_it 4.93 r_lrange_other 4.723 r_scangle_other 3.915 r_scangle_it 3.913 r_mcangle_other 3.72 r_mcangle_it 3.719 r_scbond_it 3.188 r_scbond_other 3.186 r_mcbond_other 2.877 r_mcbond_it 2.876 r_angle_refined_deg 1.575 r_angle_other_deg 0.547 r_symmetry_nbd_refined 0.323 r_nbd_other 0.231 r_nbd_refined 0.224 r_symmetry_nbd_other 0.196 r_symmetry_xyhbond_nbd_refined 0.196 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.142 r_symmetry_nbtor_other 0.089 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 938 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Coot model building XDS data reduction Aimless data scaling MOLREP phasing