8OO4

X-ray structure of the adduct formed upon reaction of cisplatin with human angiogenin after 1 month soaking

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	10% PEG6K, 20 mM sodium citrate pH 5.1, 0.2 M sodium/potassium tartrate

Crystal Properties
Matthews coefficient	Solvent content
2.15	42.87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 85.25	α = 90
b = 37.51	β = 90
c = 38.16	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-03-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1.00	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.769	42.63	95.3	0.082	0.996	17.1	10		10455

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.99	2.02	98.1		0.566	0.927	2.4	5.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.99	42.625	8525	380	96.056	0.31	0.3077	0.3672	23.288

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.078			-0.067		0.145

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	27.607
r_dihedral_angle_4_deg	20.804
r_dihedral_angle_3_deg	20.063
r_dihedral_angle_1_deg	7.551
r_lrange_it	4.919
r_lrange_other	4.868
r_mcangle_it	2.706
r_mcangle_other	2.704
r_scangle_it	2.371
r_scangle_other	2.37
r_mcbond_it	1.71
r_mcbond_other	1.71
r_angle_refined_deg	1.526
r_scbond_it	1.501
r_scbond_other	1.5
r_angle_other_deg	1.197
r_symmetry_xyhbond_nbd_refined	0.31
r_nbd_other	0.25
r_xyhbond_nbd_refined	0.218
r_symmetry_nbd_other	0.21
r_nbd_refined	0.198
r_nbtor_refined	0.161
r_symmetry_nbd_refined	0.137
r_symmetry_nbtor_other	0.079
r_chiral_restr	0.063
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	976
Nucleic Acid Atoms
Solvent Atoms	56
Heterogen Atoms	2

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing