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Carbonic Anhydrase 2 in Complex with Steriod_Sulphamoyl AKI_12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YZR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.07 40.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.087 α = 90 b = 41.194 β = 104.33 c = 72.052 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2021-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.45187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 97.6 0.022000000000000002 0.026000000000000002 1 27.2 3.1 46643
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 0.13 0.168 0.966
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 25.25 44892 2389 99.84 0.17842 0.17729 0.186 0.19965 0.2079 RANDOM 12.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.02 -0.27 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.107 r_dihedral_angle_4_deg 20.341 r_dihedral_angle_3_deg 11.714 r_dihedral_angle_1_deg 7.127 r_long_range_B_refined 3.908 r_long_range_B_other 3.689 r_scangle_other 2.109 r_mcangle_other 1.59 r_mcangle_it 1.589 r_angle_refined_deg 1.557
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.107 r_dihedral_angle_4_deg 20.341 r_dihedral_angle_3_deg 11.714 r_dihedral_angle_1_deg 7.127 r_long_range_B_refined 3.908 r_long_range_B_other 3.689 r_scangle_other 2.109 r_mcangle_other 1.59 r_mcangle_it 1.589 r_angle_refined_deg 1.557 r_angle_other_deg 1.465 r_scbond_it 1.333 r_scbond_other 1.332 r_mcbond_it 0.96 r_mcbond_other 0.951 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2051 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction MOLREP phasing