☰ Navigation Tabs
N-terminal domain of FIPV nucleocapsid protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Potassium thiocyanate, 30% w/v Polyethylene glycol monomethyl ether 2,000
Crystal Properties Matthews coefficient Solvent content 1.86 33.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.768 α = 90 b = 60.9 β = 97.92 c = 35.621 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2023-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97861 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 50 99 0.063 0.069 0.026 0.991 7.1 6.5 41565
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.18 94.8 0.187 0.207 0.088 0.978 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.16 30.55 39396 2006 98.63 0.1684 0.16761 0.1724 0.18383 0.1835 RANDOM 17.049
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.01 -0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.144 r_dihedral_angle_4_deg 16.281 r_dihedral_angle_3_deg 12.571 r_dihedral_angle_1_deg 7.194 r_long_range_B_refined 5.235 r_long_range_B_other 4.757 r_scangle_other 3.59 r_scbond_it 2.484 r_scbond_other 2.431 r_mcangle_it 2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.144 r_dihedral_angle_4_deg 16.281 r_dihedral_angle_3_deg 12.571 r_dihedral_angle_1_deg 7.194 r_long_range_B_refined 5.235 r_long_range_B_other 4.757 r_scangle_other 3.59 r_scbond_it 2.484 r_scbond_other 2.431 r_mcangle_it 2.09 r_mcangle_other 2.088 r_angle_refined_deg 1.82 r_angle_other_deg 1.429 r_mcbond_it 1.415 r_mcbond_other 1.369 r_chiral_restr 0.079 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1023 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHENIX phasing