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Crystal structure of sulfur transferase from Frondihabitans sp. PAMC28461 crystallized in the I21 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other wildtype
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 10% w/v PEG 20,000, 20% v/v PEG MME 550, 0.03 M of magnesium chloride and calcium chloride as divalent cations, and 0.1 M MOPS/HEPES-Na pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.03 39.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.47 α = 90 b = 34.76 β = 105.722 c = 93.365 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9794 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 29.147 99.3 0.99 8.4 3.7 11072
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.47 0.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.38 29.147 11071 631 99.167 0.184 0.18 0.185 0.2613 0.2683 35.072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.035 0.035 -0.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.739 r_dihedral_angle_4_deg 17.123 r_dihedral_angle_3_deg 15.955 r_dihedral_angle_1_deg 7.748 r_lrange_it 7.047 r_lrange_other 7.047 r_scangle_it 5.203 r_scangle_other 5.202 r_mcangle_it 4.471 r_mcangle_other 4.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.739 r_dihedral_angle_4_deg 17.123 r_dihedral_angle_3_deg 15.955 r_dihedral_angle_1_deg 7.748 r_lrange_it 7.047 r_lrange_other 7.047 r_scangle_it 5.203 r_scangle_other 5.202 r_mcangle_it 4.471 r_mcangle_other 4.469 r_scbond_it 3.45 r_scbond_other 3.449 r_mcbond_it 3.034 r_mcbond_other 3.034 r_angle_refined_deg 1.579 r_angle_other_deg 1.268 r_symmetry_nbd_refined 0.319 r_symmetry_xyhbond_nbd_refined 0.236 r_nbd_refined 0.208 r_nbd_other 0.206 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.155 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2325 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MERLOT phasing