☰ Navigation Tabs
DHODH in complex with compound A0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6OC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M PH 4.6 CH3COONa, 1.6-2.0 M (NH4)2SO4, 30-36% glycerol
Crystal Properties Matthews coefficient Solvent content 3.71 66.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.261 α = 90 b = 91.261 β = 90 c = 123.005 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2022-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.9792 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 50.01 97.1 0.985 7.5 8.8 20687
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.62 0.693
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.48 50.01 19725 975 96.12 0.15618 0.15392 0.1589 0.20379 0.2022 RANDOM 27.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.35 -0.7 2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.639 r_dihedral_angle_2_deg 6.609 r_dihedral_angle_1_deg 6.197 r_long_range_B_refined 4.743 r_long_range_B_other 4.133 r_rigid_bond_restr 1.34 r_mcangle_it 1.323 r_mcangle_other 1.323 r_scangle_other 1.312 r_angle_refined_deg 0.947
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.639 r_dihedral_angle_2_deg 6.609 r_dihedral_angle_1_deg 6.197 r_long_range_B_refined 4.743 r_long_range_B_other 4.133 r_rigid_bond_restr 1.34 r_mcangle_it 1.323 r_mcangle_other 1.323 r_scangle_other 1.312 r_angle_refined_deg 0.947 r_scbond_it 0.825 r_scbond_other 0.825 r_mcbond_it 0.798 r_mcbond_other 0.794 r_angle_other_deg 0.318 r_chiral_restr 0.045 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2792 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement HKL-3000 data scaling HKL-3000 data reduction HKL-3000 phasing