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Cryo-EM structure of SV2A dimer in complex levetiracetam
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 52.277 r_long_range_B_other 52.277 r_scangle_other 26.591 r_mcangle_it 26.191 r_mcangle_other 26.19 r_mcbond_it 15.732 r_mcbond_other 15.732 r_scbond_it 15.543 r_scbond_other 15.542 r_dihedral_angle_3_deg 14.999
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 52.277 r_long_range_B_other 52.277 r_scangle_other 26.591 r_mcangle_it 26.191 r_mcangle_other 26.19 r_mcbond_it 15.732 r_mcbond_other 15.732 r_scbond_it 15.543 r_scbond_other 15.542 r_dihedral_angle_3_deg 14.999 r_dihedral_angle_1_deg 4.418 r_dihedral_angle_2_deg 3.321 r_angle_refined_deg 1.251 r_angle_other_deg 0.433 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample SV2A dimer in complex with anti-epileptic drug, levetiracetam
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 424198 Reported Resolution (Å) 3.38 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50.2
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC CTF CORRECTION cryoSPARC MODEL FITTING Coot MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 6435573