☰ Navigation Tabs
Crystal structure of horse spleen L-ferritin H114A mutant at -180deg Celsius.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293.15 Ammonium sulfate (0.5-1.0M), Cadmium sulfate(12-20mM)
Crystal Properties Matthews coefficient Solvent content 3.18 61.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.219 α = 90 b = 182.219 β = 90 c = 182.219 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.15 PIXEL RIGAKU HyPix-6000HE 2022-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.109 100 0.064 0.068 0.999 25 8.6 41908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.438 0.478 0.918
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5 19.1 41826 2109 99.757 0.16 0.1593 0.1593 0.1741 0.174 10.184
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.711 r_dihedral_angle_3_deg 14.058 r_dihedral_angle_2_deg 6.511 r_lrange_it 5.564 r_lrange_other 5.564 r_dihedral_angle_1_deg 4.922 r_scangle_it 4.019 r_scangle_other 4.017 r_scbond_it 2.561 r_scbond_other 2.559
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.711 r_dihedral_angle_3_deg 14.058 r_dihedral_angle_2_deg 6.511 r_lrange_it 5.564 r_lrange_other 5.564 r_dihedral_angle_1_deg 4.922 r_scangle_it 4.019 r_scangle_other 4.017 r_scbond_it 2.561 r_scbond_other 2.559 r_mcangle_it 2.317 r_mcangle_other 2.316 r_angle_refined_deg 1.732 r_mcbond_it 1.566 r_mcbond_other 1.554 r_angle_other_deg 0.61 r_symmetry_nbd_refined 0.325 r_nbd_refined 0.254 r_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.187 r_symmetry_xyhbond_nbd_other 0.184 r_symmetry_nbd_other 0.169 r_symmetry_xyhbond_nbd_refined 0.155 r_nbd_other 0.149 r_symmetry_metal_ion_refined 0.139 r_metal_ion_refined 0.111 r_chiral_restr 0.087 r_symmetry_nbtor_other 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1388 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 36
Software Software Software Name Purpose CrysalisPro data collection CrysalisPro data reduction Aimless data scaling MOLREP phasing REFMAC refinement Coot model building