8I26 | pdb_00008i26

NMR structure of Toxoplasma gondii PDCD5 (cis form)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCACB0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
23D CBCA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
33D HNCA0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
43D HNCO0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
52D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
63D 1H-13C NOESY0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
73D 1H-15N NOESY0.5 mM [U-100% 13C; U-100% 15N] Protein, 25 mM sodium phosphate, 100 mM sodium chloride, 10 mM sodium azide, 1 mM PMSF90% H2O/10% D2O125 mM4.51 atm310Bruker AVANCE 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
3BrukerAVANCE850
NMR Refinement
MethodDetailsSoftware
distance geometryCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100000
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANAGuntert, Mumenthaler and Wuthrich
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3chemical shift assignmentSparkyGoddard
4peak pickingSparkyGoddard