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Crystal structure of AbHheG from Acidimicrobiia bacterium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7WKQ 7WKQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 20% PEG 3350, 0.1 Bis-Tris pH 6.5, 2% v/v Tacsimate pH6.0
Crystal Properties Matthews coefficient Solvent content 2.13 42.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.887 α = 69.24 b = 62.407 β = 82.88 c = 71.415 γ = 62.19
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2022-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 1.0 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 52.01 95.7 0.048 0.06 0.035 0.996 7.7 2.6 120656
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 94.4 0.34 0.423 0.248 0.905 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7WKQ 1.55 52.01 114706 5949 95.69 0.1731 0.1717 0.1829 0.2002 0.2072 RANDOM 20.294
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 1.12 0.86 0.11 0.49 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.544 r_dihedral_angle_4_deg 18.128 r_dihedral_angle_3_deg 14.878 r_dihedral_angle_1_deg 6.675 r_angle_other_deg 1.51 r_angle_refined_deg 1.491 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.544 r_dihedral_angle_4_deg 18.128 r_dihedral_angle_3_deg 14.878 r_dihedral_angle_1_deg 6.675 r_angle_other_deg 1.51 r_angle_refined_deg 1.491 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7328 Nucleic Acid Atoms Solvent Atoms 736 Heterogen Atoms 18
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing