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Crystal Structure Analysis of Aspergillus fumigatus alkaline protease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 289 polyethyleneglycol 550 monomethylether, polyethyleneglycol 20,000, MES/Imidazole buffer
Crystal Properties Matthews coefficient Solvent content 2 42.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.605 α = 90 b = 70.765 β = 90 c = 78.555 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Flat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M2 2021-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.06 52.577 93.5 0.076 0.088 0.043 8.6 3.8 142896 142896
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.06 1.12 65.2 1.125 1.125 1.45 0.903 0.7 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.06 30.58 135789 7013 93.24 0.1412 0.1402 0.1409 0.16 0.1605 RANDOM 13.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.07 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.524 r_sphericity_free 24.576 r_dihedral_angle_4_deg 12.919 r_dihedral_angle_3_deg 11.748 r_sphericity_bonded 7.175 r_dihedral_angle_1_deg 6.234 r_rigid_bond_restr 3.55 r_angle_refined_deg 1.384 r_angle_other_deg 1.038 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.524 r_sphericity_free 24.576 r_dihedral_angle_4_deg 12.919 r_dihedral_angle_3_deg 11.748 r_sphericity_bonded 7.175 r_dihedral_angle_1_deg 6.234 r_rigid_bond_restr 3.55 r_angle_refined_deg 1.384 r_angle_other_deg 1.038 r_chiral_restr 0.093 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2787 Nucleic Acid Atoms Solvent Atoms 483 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling Arcimboldo phasing PDB_EXTRACT data extraction