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Crystal structure of Rv1916 (residues 233-398)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6EDW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 20% (w/v) PEG3350, 0.2 M potassium thiocyanate, 0.1 M Bis-Tris propane pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.61 65.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.046 α = 90 b = 86.046 β = 90 c = 73.586 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 85 PIXEL DECTRIS EIGER X 16M 2018-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953724 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 46.89 100 0.999 12 26.6 41501
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.57 99.9 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.54 46.89 41435 2110 99.993 0.171 0.1702 0.1847 0.19 0.1989 RANDOM 27.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.534 -0.534 1.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.44 r_dihedral_angle_3_deg 12.632 r_lrange_it 7.637 r_lrange_other 7.625 r_scangle_it 6.718 r_scangle_other 6.715 r_dihedral_angle_2_deg 6.09 r_dihedral_angle_1_deg 5.946 r_scbond_it 4.531 r_scbond_other 4.528
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.44 r_dihedral_angle_3_deg 12.632 r_lrange_it 7.637 r_lrange_other 7.625 r_scangle_it 6.718 r_scangle_other 6.715 r_dihedral_angle_2_deg 6.09 r_dihedral_angle_1_deg 5.946 r_scbond_it 4.531 r_scbond_other 4.528 r_mcangle_other 3.301 r_mcangle_it 3.299 r_mcbond_it 2.27 r_mcbond_other 2.27 r_angle_refined_deg 1.776 r_angle_other_deg 0.603 r_nbd_refined 0.21 r_symmetry_xyhbond_nbd_refined 0.195 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.153 r_nbd_other 0.143 r_symmetry_nbd_refined 0.109 r_chiral_restr 0.096 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1328 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing