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Nodavirus RNA replication protein A polymerase domain, local refinement
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.474 f_angle_d 0.372 f_chiral_restr 0.046 f_plane_restr 0.002 f_bond_d 0.001
Sample Nodavirus RNA replication protein A polymerase domain, local refinement
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 1074227 Reported Resolution (Å) 6.3 Resolution Method FSC 0.143 CUT-OFF Other Details Local refinement Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 100
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cisTEM 2.0 IMAGE ACQUISITION SerialEM 3.8 CTF CORRECTION cisTEM 2.0 MODEL FITTING UCSF ChimeraX 1.3 MODEL FITTING Coot 0.9.8.1 MODEL FITTING ISOLDE 1.3 MODEL REFINEMENT PHENIX 1.20.1 INITIAL EULER ASSIGNMENT cisTEM 2.0 FINAL EULER ASSIGNMENT cisTEM 2.0 CLASSIFICATION cisTEM 2.0 RECONSTRUCTION cisTEM 2.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION